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95 packages found
JBrowse 2 code shared between web-app type products
JBrowse 2 code shared between products but not used by plugins
Node program to run canvasXpress in the command line
A general purpose module for parsing FASTA files
Read Tabix-indexed files, supports both .tbi and .csi indexes
Parser for BAM and BAM index (bai) files
JBrowse 2 text indexing for desktop
Read features from JBrowse 1 format nested containment list JSON
Chromosome visualization for the web
High performance streaming Variant Call Format (VCF) parser in pure JavaScript
The 'pca-plot' package is a way to check seq data quality. It visualises the data conditionally in a 2D or 3D plot (dependent on the number of PCs selected), where each point represents a sample. The distance between the points is a measure of the similar
Volcano Plot is a React.js component powered by Highcharts, designed to visualise RNA sequencing data and identify statistically significant genes. It allows dynamic threshold adjustment for a comprehensive and interactive data analysis experience.
read CRAM files with pure Javascript
read and write GTF data as streams
Chromosomal region class used in GIVE, supporting some basic region operations
Program to run canvasXpress with node
Chromosome visualization with D3.js
Components for displaying FHIR genomic reports complying to the FHIR Genomics Reporting Implementation Guide http://hl7.org/fhir/uv/genomics-reporting/.
Basic kaplan-meier methods