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254 packages found

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cytoscape

Graph theory (a.k.a. network) library for analysis and visualisation

maxkfranz
published version 3.32.1, 4 days ago337 dependents licensed under $MIT
6,038,308

@gmod/gff

read and write GFF3 data as streams

cmdcolin
published version 1.3.0, 3 years ago18 dependents licensed under $MIT
26,020

@gmod/bgzf-filehandle

read from a compressed bgzip file (with .gzi) as if it were uncompressed

cmdcolin
published version 4.0.0, 2 months ago17 dependents licensed under $MIT
14,058

generic-filehandle

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

cmdcolin
published version 3.2.0, a year ago31 dependents licensed under $MIT
7,518

@gmod/bam

Parser for BAM and BAM index (bai) files

cmdcolin
published version 6.0.4, 2 months ago17 dependents licensed under $MIT
7,313

sniper

Renders snippets on demand

greenify
published version 0.2.17, 9 years ago3 dependents licensed under $Apache 2
3,585

@jbrowse/core

JBrowse 2 core libraries used by plugins

cmdcolin
published version 3.6.2, 11 hours ago47 dependents licensed under $Apache-2.0
3,188

@gmod/tabix

Read Tabix-indexed files, supports both .tbi and .csi indexes

cmdcolin
published version 3.0.5, 2 months ago24 dependents licensed under $MIT
4,498

@gmod/bed

A BED file format parser with autoSql support

cmdcolin
published version 2.1.7, 2 months ago4 dependents licensed under $MIT
3,252

@gmod/bbi

Parser for BigWig/BigBed files

cmdcolin
published version 7.0.5, a month ago17 dependents licensed under $MIT
4,048

@gmod/vcf

High performance streaming Variant Call Format (VCF) parser in pure JavaScript

cmdcolin
published version 6.0.9, 3 months ago22 dependents licensed under $MIT
4,181

@gmod/cram

read CRAM files with pure Javascript

cmdcolin
published version 5.0.5, 2 months ago1 dependents licensed under $MIT
4,068

@gmod/indexedfasta

read indexed fasta and bgzipped fasta formats

cmdcolin
published version 4.0.6, a month ago11 dependents licensed under $MIT
3,841

@jbrowse/sv-core

JBrowse 2 code shared between sv type code

cmdcolin
published version 3.6.2, 11 hours ago3 dependents licensed under $Apache-2.0
2,552

biojs-io-newick

Parses newick strings into JSON and JSON into newick

ddao
published version 1.5.0, 10 years ago11 dependents licensed under $Apache 2
2,633

@gmod/twobit

Read .2bit files in node or webpack

cmdcolin
published version 6.0.1, 2 months ago6 dependents licensed under $MIT
2,738

generic-filehandle2

uniform interface for accessing binary data from local files, remote HTTP resources, and browser Blob data

cmdcolin
published version 2.0.12, a month ago17 dependents licensed under $MIT
2,842

gff-nostream

utilities to read GFF3 data

cmdcolin
published version 1.3.6, 2 months ago1 dependents licensed under $MIT
1,985

@gmod/nclist

Read features from JBrowse 1 format nested containment list JSON

cmdcolin
published version 3.0.1, 2 months ago4 dependents licensed under $MIT
2,711

@jbrowse/product-core

JBrowse 2 code shared between products but not used by plugins

cmdcolin
published version 3.6.2, 11 hours ago11 dependents licensed under $Apache-2.0
2,143