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21 packages found
A WebGL-powered JavaScript library for interactive tree visualisation.
TypeScript/JavaScript methods for parsing and writing in Newick tree format.
A packaged version of Christain M. Zmasek's archaeopteryx.js phylogenetic tree viewer
Console line interface that process phylogenetic trees metrics.
- phylogenetic trees
- metrics
- robinson foulds
- cli
- phylo
- newick
- phylogeny
- phylogenetic
- triplet metric
- quartet metric
- compararison metrics
Phylogenetic tree visualistion for the web
Tree data manipulation for TnT
JavaScript library for parsing the NHX/Newick format.
Community finding algorithm.
- louvain
- algorithm
- community
- finding
- ist
- tecnico
- luis
- rita
- warcraft12321
- phylogenetic
- networks
- application
- biomedical
- engineering
Generates a benchmark network upon input of a mix and average degree for each node in the graph.
- girvan
- newman
- benchmark
- algorithm
- synthetic
- network
- ist
- tecnico
- luis
- rita
- warcraft12321
- community
- finding
- phylogenetic
This algorithm assesses how similar are 2 input partitions of a given network.
- normalized
- mutual
- information
- ist
- tecnico
- luis
- rita
- warcraft12321
- community
- finding
- phylogenetic
- networks
- application
A packaged version of Christain M. Zmasek's archaeopteryx.js phylogenetic tree viewer
Infomap optimizes the map equation, which exploits the information-theoretic duality between the problem of compressing data, and the problem of detecting and extracting significant patterns or structures within those data.
Layered Label Propagation is a semi-supervised machine learning algorithm that assigns labels to previously unlabeled data points. At the start of the algorithm, a (generally small) subset of the data points have labels (or classifications). These labels
- layered
- label
- propagation
- ist
- tecnico
- luis
- rita
- warcraft12321
- community
- finding
- phylogenetic
- networks
- application
Given 2 arrays, hamming distance is calculated between them.
- hamming
- distance
- ist
- tecnico
- luis
- rita
- warcraft12321
- community
- finding
- phylogenetic
- networks
- application
- biomedical
- engineering
Software to graphically display the results of a CAFE analysis
TnT library for displaying trees and track-based annotations
React integration of phylocanvas.gl. Component and hook for phylogenetic tree visualistion.
React component (and hook) for phylogenetic tree visualistion based on @mkoliba/phylogeny-tree
Phylogenetic tree visualisation for the web.