Sequence analyses

Extract sequences and submit them to external analysis services

Description

Extract sequences from input file or from standard input. Sends them to external services, HMMer web server, and InterProScan. Retrieve the results and store them into a JSON file

Installation and usage

Global installation:

npm install -g sequence-analyses

Usage without installation:

npx sequence-analyses

Usage after global installation:

sequence-analyses

Options

flag	alias	description	choices	default
-i	--input	Input file or string	[string]	stdin
-t	--type	Type of input	pdb	pdb
	--email	Email address (required by InterProScan)	[string]
-o	--output	Output file	[string]	stdout
	--force-output	Force overwriting the output file if it already exists	[boolean]	false
-s	--silent	Don't output anything to stderr (no spinner)	[boolean]	false
	--version	Show version number
	--help	Show help