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sequence-analyses

1.2.0 • Public • Published

Sequence analyses

Extract sequences and submit them to external analysis services

NPM version

Description

Extract sequences from input file or from standard input. Sends them to external services, HMMer web server, and InterProScan. Retrieve the results and store them into a JSON file

Installation and usage

Global installation:

npm install -g sequence-analyses

Usage without installation:

npx sequence-analyses

Usage after global installation:

sequence-analyses

Options

flag alias description choices default
-i --input Input file or string [string] stdin
-t --type Type of input pdb pdb
--email Email address (required by InterProScan) [string]
-o --output Output file [string] stdout
--force-output Force overwriting the output file if it already exists [boolean] false
-s --silent Don't output anything to stderr (no spinner) [boolean] false
--version Show version number
--help Show help

Install

npm i sequence-analyses

DownloadsWeekly Downloads

1

Version

1.2.0

License

ISC

Unpacked Size

13 kB

Total Files

11

Last publish

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