sparse-array-rled
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1.1.0 • Public • Published

sparse-array-rled

Sparse array with run-length encoded deletions

npm i --save sparse-array-rled

About

This package provides SparseArray<T>, a sparse array with values of type T.

SparseArray<T> behaves similarly to an ordinary Array<T> used in sparse mode. However, it is additionally optimized for the following tasks:

  1. Convert between the array and a compact JSON representation with run-length encoded deletions (SerializedSparseArray<T>). For example, the sparse array ["foo", "bar", , , , "X", "yy"] serializes to [["foo", "bar"], 3, ["X", "yy"]].
  2. Iterate over present values only.
  3. Convert between a count c and the c-th present entry.

For ordinary array tasks, SparseArray aims to have comparable memory usage and acceptable speed relative to an ordinary Array. However, indexed accesses are slower in principle, due to internal searches (similar to balanced-tree collections).

For special cases, SparseString and SparseIndices implement the same functionality with additional optimizations:

  • SparseString is functionally identical to a SparseArray with single-char values, but it uses strings (e.g. "abc") instead of arrays (e.g. ["a", "b", "c"]) in its internal state and serialized form. This typically uses less memory (2x in our benchmarks) and results in smaller JSON, though with a slight cost in mutation speed.
  • SparseIndices is functionally identical to a SparseArray, except that it only stores which indices are present, not their associated values. This typically uses much less memory (4x in our benchmarks) and results in much smaller JSON.

Disclaimer: This library is still in alpha. I have unit & fuzz tested the core functionality, but not every edge case or utility function.

Example Use Cases

I use this package in collaborative situations, where individual users perform actions in order, but some of these actions may be deleted/undone/not-yet-received - causing sparsity.

  1. Collaborative text/list editing: Group sequential insertions by a single user into "bunches", which map a bunch ID to its sequence of values. Later, some values may be deleted, making the sequence sparse.
    • This is how list-positions represents the state of a List: as a Map<bunchID, SparseArray>.
  2. General collaboration or peer-to-peer networking: Track which messages you've received from another user/peer using a SparseIndices. Typically, this will be a single number ("all messages 0 through n-1"), but dropped/reverted messages could make the indices sparse.
    • A Map<peerID, SparseIndices> generalizes vector clocks and provides a space-optimized alternative to dotted vector clocks, described here.

Usage

Create and mutate a sparse array:

import { SparseArray } from "sparse-array-rled";

const arr = SparseArray.new<string>();
arr.set(0, "a");
arr.set(1, "b");
arr.set(1, "c");
arr.set(4, "d");
arr.delete(0);

console.log([...arr.entries()]); // Prints [[1, 'c'], [4, 'd']]

Basic queries:

arr.get(1); // 'c'
arr.get(4); // 'd'
arr.get(0); // undefined
arr.get(10000); // undefined

arr.has(1); // true
arr.has(0); // false

// Length is the last present index + 1 (or 0 if empty).
console.log(arr.length); // Prints 5
// Note: All methods accept index arguments `>= this.length`, acting as if
// the array ends with infinitely many holes.

Queries that only consider present values:

const arr2 = SparseArray.fromEntries([
  [0, "e"],
  [1, "f"],
  [5, "g"],
  [6, "h"],
]);

// Total present values.
arr2.count(); // 4

// Present values within a given slice.
arr2.countBetween(0, 4); // 2

// Present values up to but excluding a given index, plus whether that index is present.
arr2.countAt(4); // 2
arr2.countAt(6); // 3

// Find the c-th present index, or -1 if c is too large.
arr2.indexOfCount(1); // 1
arr2.indexOfCount(2); // 5
arr2.indexOfCount(5); // -1
arr2.indexOfCount(1000); // -1

Bulk mutations are specially optimized:

const arr3 = SparseArray.new<string>();

// Set multiple values (the rest parameters).
arr3.set(0, "m", "n", "o", "p", "q");
// Delete multiple values (the second arg, which says how many to delete -
// *not* the index to end at.).
arr3.delete(3, 2);

console.log([...arr3.entries()]); // Prints [[0, 'm'], [1, 'n'], [2, 'o']]

Mutations return the previous values as a SparseArray:

// arr3 starts as above: entries [[0, 'm'], [1, 'n'], [2, 'o']].
const previous = arr3.delete(1, 5);
console.log([...previous.entries()]); // Prints [[0, 'n'], [1, 'o']]
console.log(previous.length); // Prints 2 (last present index + 1) - not necessarily the delete count.

Serialized form

The serialized form, SerializedSparseArray<T>, uses run-length encoded deletions. Specifically, it is an array that alternates between:

  • arrays of present values (even indices), and
  • numbers (odd indices), representing that number of deleted values.

For example:

const arr4 = SparseArray.fromEntries([
  [0, "foo"],
  [1, "bar"],
  [5, "X"],
  [6, "yy"],
]);
console.log(arr4.serialize()); // Prints [['foo', 'bar'], 3, ['X', 'yy']]

Deserialize with const arr3 = SparseArray.fromSerialized(serialized).

arr.toString() returns the JSON-encoded serialized form.

Iterators

entries() and keys() have the same signature as Array, but they do not visit empty slots (as seen in the code snippets above). items() is an optimized alternative that iterates over runs of present values.

newSlicer() is an additional iterator that lets you iterate through the array one "slice" at a time.

Iterators (entries, keys, newSlicer) are invalidated by concurrent mutations, unlike the built-in Array iterators (but like most Java Collections). We do not attempt to detect concurrent mutations and throw errors.

SparseString and SparseIndices

SparseString and SparseIndices have essentially the same API as SparseArray<T>, except that values: T[] is replaced by chars: string for SparseString and count: number for SparseIndices.

Internals

Internally, the state of a SparseArray<T> as stored as an Array<{ index: number, values: T[] }>, indicating that a run of present values starts at index. These pairs are in order by index and always have deleted values in between them.

When the state can be represented as an ordinary Array - i.e., it is not sparse except for holes at the end - it may be stored as such. This saves some memory in our text-editing benchmarks, which create many (~10k) small sparse arrays, a decent fraction of which are not sparse.

To reduce repetition and code size, most functionality for the three exported classes (SparseArray, SparseString, SparseIndices) is inherited from a common superclass, SparseItems<I>. It is a template class that defines mutations and queries in terms of "items" of type I, which represent a run of present values: T[] for SparseArray, string for SparseString, number for SparseIndices.

Performance

To benchmark the library, I applied the operations corresponding to a collaborative text-editing trace (Martin Kleppmann's automerge-perf), simulating this library's usage by the list-positions library as described above. The trace uses 3301 sparse arrays with average final length 40.4 (max final length 7352). It is 260k ops long, with 182k sets and 77k deletes, and the ending state has 105k chars.

In addition to this library's classes, the benchmarks test two ways of using a plain Array<string> in sparse mode (see benchmarks/impls/plain_array.ts).

Results:

Implementation Total time (ms) Ending memory usage (MB)
SparseArray 59.3 +- 5.4 1.98
SparseString 67.5 +- 9.5 1.13
SparseIndices 53.2 +- 1.5 0.48
PlainArray 89.3 +- 1.1 2.02
PlainArray2 60.7 +- 2.8 1.90

For additional microbenchmarks, see benchmark_results.md, which reports the time to perform 1,000,000 operations of various types (implemented in benchmarks/traces.ts).

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