bionode-sra2.0.0 • Public • Published
A Node.js wrapper for SRA Toolkit.
You need to install the latest Node.JS first, please check nodejs.org or do the following:
# Ubuntusudo apt-get install npm# Macbrew install node# Bothnpm install -g nn stable
bionode-sra as a command line tool, you can install it globally with
npm install bionode-sra -g
node_modules directory by doing the same command without
npm i bionode-sra # 'i' can be used as shortcut to 'install'
If you're using bionode-sra with Node.js, you can require the module:
var sra =var fastqDump =
Please read the documentation for the methods exposed by bionode.
Command line examples
$ bionode-sra fastq-dump SRR1509835.sra$ bionode-sra fastq-dump SRR1509835.sra fastqOutputDirectory
Check our documentation at doc.bionode.io or do:
We welcome all kinds of contributions at all levels of experience, please read the CONTRIBUTING.md to get started!
Don't be shy! Come talk to us 😃