sboljs3 is a library for the Synthetic Biology Open Language (SBOL) written in TypeScript, for JavaScript/TypeScript applications in the browser or node.js.
sboljs3 is built on rdfoo, a library for creating object oriented RDF abstractions in TypeScript. It can therefore be used in conjunction with other rdfoo abstractions. For example, the PROV-O abstraction used by sboljs3 is provided by rdfoo-prov.
Implemented so far
- Reading and writing SBOL1, SBOL2, and SBOL3
- Converting between SBOL1, SBOL2, and SBOL3
- Reading (converting) FASTA and GenBank
Not implemented so far
- Writing FASTA and GenBank
- Validation
Citation
If you use this library in your work, please cite
@article{sboljs,
author = {McLaughlin, James Alastair and Myers, Chris J. and Zundel, Zach and Wilkinson, Nathan and Atallah, Christian and Wipat, Anil},
title = {sboljs: Bringing the Synthetic Biology Open Language to the Web Browser},
journal = {ACS Synthetic Biology},
volume = {8},
number = {1},
pages = {191-193},
year = {2019},
doi = {10.1021/acssynbio.8b00338},
URL = { https://doi.org/10.1021/acssynbio.8b00338 },
eprint = { https://doi.org/10.1021/acssynbio.8b00338 }
}