ribxzcli

oclif-hello-world

oclif example Hello World CLI

• Usage
• Commands

Usage

$ npm install -g ribxzcli
$ ribxzcli COMMAND
running command...
$ ribxzcli (--version)
ribxzcli/0.4.4 linux-x64 node-v18.14.0
$ ribxzcli --help [COMMAND]
USAGE
  $ ribxzcli COMMAND
...

Commands

• ribxzcli db
• ribxzcli db status
• ribxzcli help [COMMAND]
• ribxzcli struct RCSB_ID
• ribxzcli struct obtain RCSB_ID
• ribxzcli struct show RCSB_ID

ribxzcli db

USAGE
  $ ribxzcli db [-r <value>] [-a <value>] [-p <value>] [-u <value>] [-d <value>] [-e <value>]

FLAGS
  -a, --NEO4J_URI=<value>
  -d, --NEO4J_CURRENTDB=<value>
  -e, --env=<value>              Environment variable
  -p, --NEO4J_PASSWORD=<value>
  -r, --RIBETL_DATA=<value>
  -u, --NEO4J_USER=<value>

See code: dist/commands/db/index.js

ribxzcli db status

Query structure in the database

USAGE
  $ ribxzcli db status [-r <value>] [-a <value>] [-p <value>] [-u <value>] [-d <value>] [--PYTHONBIN <value>]
    [--COMMIT_STRUCTURE_SH <value>] [--EXTRACT_BSITES_PY <value>] [--RENDER_THUMBNAIL_PY <value>] [--SPLIT_RENAME_PY
    <value>] [-e <value>] [-A]

FLAGS
  -A, --updateall
  -a, --NEO4J_URI=<value>
  -d, --NEO4J_CURRENTDB=<value>
  -e, --env=<value>              Environment variable
  -p, --NEO4J_PASSWORD=<value>
  -r, --RIBETL_DATA=<value>
  -u, --NEO4J_USER=<value>
  --COMMIT_STRUCTURE_SH=<value>
  --EXTRACT_BSITES_PY=<value>
  --PYTHONBIN=<value>
  --RENDER_THUMBNAIL_PY=<value>
  --SPLIT_RENAME_PY=<value>

DESCRIPTION
  Query structure in the database

ribxzcli help [COMMAND]

Display help for ribxzcli.

USAGE
  $ ribxzcli help [COMMAND] [-n]

ARGUMENTS
  COMMAND  Command to show help for.

FLAGS
  -n, --nested-commands  Include all nested commands in the output.

DESCRIPTION
  Display help for ribxzcli.

See code: @oclif/plugin-help

ribxzcli struct RCSB_ID

USAGE
  $ ribxzcli struct [RCSB_ID] [-r <value>] [-a <value>] [-p <value>] [-u <value>] [-d <value>] [-e <value>]

FLAGS
  -a, --NEO4J_URI=<value>
  -d, --NEO4J_CURRENTDB=<value>
  -e, --env=<value>              Environment variable
  -p, --NEO4J_PASSWORD=<value>
  -r, --RIBETL_DATA=<value>
  -u, --NEO4J_USER=<value>

See code: dist/commands/struct/index.js

ribxzcli struct obtain RCSB_ID

Query structure in the database

USAGE
  $ ribxzcli struct obtain [RCSB_ID] [-r <value>] [-a <value>] [-p <value>] [-u <value>] [-d <value>] [--PYTHONBIN
    <value>] [--COMMIT_STRUCTURE_SH <value>] [--EXTRACT_BSITES_PY <value>] [--RENDER_THUMBNAIL_PY <value>]
    [--SPLIT_RENAME_PY <value>] [-e <value>] [-R] [-C]

FLAGS
  -C, --commit
  -R, --repair
  -a, --NEO4J_URI=<value>
  -d, --NEO4J_CURRENTDB=<value>
  -e, --env=<value>              Environment variable
  -p, --NEO4J_PASSWORD=<value>
  -r, --RIBETL_DATA=<value>
  -u, --NEO4J_USER=<value>
  --COMMIT_STRUCTURE_SH=<value>
  --EXTRACT_BSITES_PY=<value>
  --PYTHONBIN=<value>
  --RENDER_THUMBNAIL_PY=<value>
  --SPLIT_RENAME_PY=<value>

DESCRIPTION
  Query structure in the database

ribxzcli struct show RCSB_ID

Query structure in the database

USAGE
  $ ribxzcli struct show [RCSB_ID] [-r <value>] [-a <value>] [-p <value>] [-u <value>] [-d <value>] [--PYTHONBIN
    <value>] [--COMMIT_STRUCTURE_SH <value>] [--EXTRACT_BSITES_PY <value>] [--RENDER_THUMBNAIL_PY <value>]
    [--SPLIT_RENAME_PY <value>] [-e <value>] [--files] [--db] [--dryrun] [-f]

FLAGS
  -a, --NEO4J_URI=<value>
  -d, --NEO4J_CURRENTDB=<value>
  -e, --env=<value>              Environment variable
  -f, --force
  -p, --NEO4J_PASSWORD=<value>
  -r, --RIBETL_DATA=<value>
  -u, --NEO4J_USER=<value>
  --COMMIT_STRUCTURE_SH=<value>
  --EXTRACT_BSITES_PY=<value>
  --PYTHONBIN=<value>
  --RENDER_THUMBNAIL_PY=<value>
  --SPLIT_RENAME_PY=<value>
  --db
  --dryrun
  --files

DESCRIPTION
  Query structure in the database