Search results

8 packages found

fastq wrapper persisted queue on disk to save some memory

published version 0.1.9, 3 years ago0 dependents licensed under $MIT
118

Package developed at A&A Biotechnology for reading all kinds of biotechnology related files

published version 1.0.10, a year ago0 dependents licensed under $MIT
66

.fasta and .fastq parsers

published version 1.1.2, 4 years ago0 dependents licensed under $ISC
44

Used for reading fasta and fastq files and structuring as valid javascript objects. The package provides also some useful utility functions like complementarify used for getting complementary sequence, or sanitizeGenome for sanitizing user input.

published version 1.0.8, 3 years ago0 dependents licensed under $ISC
39

Streamable FASTQ parser

published version 2.2.0, 8 years ago0 dependents licensed under $MIT
18

Tools for working with FASTA/FASTQ files (Bioinformatics).

published version 0.2.1, 8 years ago0 dependents licensed under $MIT
17

A simple fastq stream parser

published version 1.0.0, 6 years ago0 dependents licensed under $GPL-3.0
10

These two tools allow the counting of alignment flags (https://broadinstitute.github.io/picard/explain-flags.html) in a SAM formated file and the extraction of reads for selected flags.

published version 0.2.0, 4 years ago0 dependents licensed under $MIT
8