Search results

bioseq-ts

Biological Sequence in Javascript, written in Typescript.

• bioinformatics
• sequence
• FASTA
• PHYLIP
• biowonks
• biology

daviortega

• 0.3.3-0 • 5 years ago • 2 dependents • CC0-1.0published version 0.3.3-0, 5 years ago2 dependents licensed under $CC0-1.0

generic-sequence-panel

read feature and sequence data and produce highlighted fasta

• bioinformatics
• gene page
• FASTA
• DNA
• gene structure
• JBrowse

scottcain

• 1.7.0 • 4 months ago • 0 dependents • MITpublished version 1.7.0, 4 months ago0 dependents licensed under $MIT

@plantinformatics/vcf-genotype-brapi

Client and server functions to access genotype data from VCF via a custom web API and BrAPI

• javascript
• BrAPI
• VCF
• genotype
• bioinformatics

don-isdale

• 1.0.17 • 5 days ago • 0 dependents • GPL-3.0-or-laterpublished version 1.0.17, 5 days ago0 dependents licensed under $GPL-3.0-or-later

aminosee

A unique visualisation of any large chunk of DNA or RNA residing in ASCII text files (such as FASTA, GBK etc and also just .txt like my hand-made test files), AminoSee is a way to render huge genomics files into a left-to-right top-bottom PNG linear image

• dna
• genomics
• visualisation
• renderer
• genetics
• bioinformatics
• bionode
• amino acids
• peptides
• codons

tomachi

• 1.32.8 • 4 years ago • 0 dependents • GPL-3.0-onlypublished version 1.32.8, 4 years ago0 dependents licensed under $GPL-3.0-only

phylogician-ts

Module to read, manipulate and write phylogenetic trees. Written in TypeScript

• bioinformatics
• phylogenetics
• biology
• biowonks

daviortega

• 0.11.3-0 • 5 years ago • 1 dependents • CC0-1.0published version 0.11.3-0, 5 years ago1 dependents licensed under $CC0-1.0

ntseq

Nucleotide sequence manipulation and analysis library

• nucleotide
• nucleic
• acid
• dna
• rna
• sequence
• bioinformatics
• biotechnology
• computational
• biology
• analysis
• genomics
• gene
• biojs

keithwhor

• 1.1.0 • 8 years ago • 1 dependents • MITpublished version 1.1.0, 8 years ago1 dependents licensed under $MIT

scran.js

Single cell RNA-seq analysis in Javascript

• bioinformatics
• scRNA-seq
• single-cell
• webassembly

jkanche

• 3.0.2 • a year ago • 4 dependents • MITpublished version 3.0.2, a year ago4 dependents licensed under $MIT

bakana

Backend for kana's single-cell analyses. This supports single or multiple samples, execution in Node.js or the browser, in-memory caching of results for iterative analyses, and serialization to/from file for redistribution.

• bioinformatics
• single-cell
• scRNA-seq

ltla

• 3.0.1 • 2 years ago • 1 dependents • MITpublished version 3.0.1, 2 years ago1 dependents licensed under $MIT

@ebi-gene-expression-group/react-ebi-species

React component based on the EBI species icons

• react
• icon
• ebi
• species
• ensembl
• bioinformatics
• biology
• rabbit
• chicken

lingyun1010

• 2.6.6 • 3 months ago • 1 dependents • MITpublished version 2.6.6, 3 months ago1 dependents licensed under $MIT

vue-phylogram

Vue component for displaying phylogenetic trees

• bioinformatics
• vue
• d3
• phylogeny

lcottret

• 3.4.3 • a year ago • 1 dependents • Apache-2.0published version 3.4.3, a year ago1 dependents licensed under $Apache-2.0

vue-svg-msa

Vue component to create a sequence multiple alignment in SVG

• bioinformatics
• alignment
• vue
• msa

sallet

• 3.7.3 • 4 years ago • 1 dependents • Apache-2.0published version 3.7.3, 4 years ago1 dependents licensed under $Apache-2.0

sourmash

tools for comparing biological sequences with k-mer sketches

• minhash
• bioinformatics

luizirber

• 0.19.0 • 4 months ago • 1 dependents • BSD-3-Clausepublished version 0.19.0, 4 months ago1 dependents licensed under $BSD-3-Clause

vue-msa-overview

Vue component for displaying an overview of a multiple sequence alignment

• bioinformatics
• alignment
• vue
• msa

lcottret

• 1.0.0 • 5 years ago • 1 dependents • Apache-2.0published version 1.0.0, 5 years ago1 dependents licensed under $Apache-2.0

bioinfo-python

A lab manual for Bioinformatics with Biopython.

• bioinformatics
• biopython
• lab
• manual

harshsingh19005

• 1.0.3 • 25 days ago • 0 dependents • MITpublished version 1.0.3, 25 days ago0 dependents licensed under $MIT

@weng-lab/genomebrowser

UMMS Genome Browser

• genomics
• bioinformatics

jairmeza

• 0.0.24 • a month ago • 0 dependents • ISCpublished version 0.0.24, a month ago0 dependents licensed under $ISC

pulchra-wasm

Pulchra secondary structure extraction tool port to WASM

• proteins
• bioinformatics
• secondary
• structure

milot-mirdita

• 0.0.3 • 2 years ago • 0 dependents • MITpublished version 0.0.3, 2 years ago0 dependents licensed under $MIT

bionode-fasta

Streamable FASTA parser

• bio
• biology
• bioinformatics
• bionode
• fasta
• parser
• streams
• cli
• science

bmpvieira

• 0.5.6 • 8 years ago • 4 dependents • MITpublished version 0.5.6, 8 years ago4 dependents licensed under $MIT

run-pipeline

Run docker containers in parallel. locally or cloud. actively used for Bioinformatics pipelines at Radiant Genomics

• Docker
• AWS
• EC2
• pipeline
• bioinformatics

dchandran

• 0.0.37 • 8 years ago • 0 dependents • MITpublished version 0.0.37, 8 years ago0 dependents licensed under $MIT

fasta-parser

Buffer Stream parser from FASTA to JSON

• bio
• biology
• bioinformatics
• fasta
• parser
• streams
• science

bmpvieira

• 0.1.0 • 11 years ago • 1 dependents • MITpublished version 0.1.0, 11 years ago1 dependents licensed under $MIT

@lipme/omique-utils-pipeline

A utility pipeline for visualizing and analyzing genomic data, designed for bioinformatics applications.

• visualization
• genomics
• bioinformatics

needy_olive

• 0.1.14 • 2 months ago • 0 dependents • ISCpublished version 0.1.14, 2 months ago0 dependents licensed under $ISC