newick2phyloxml

A one function module to convert newick to phyloxml

Installation

npm install newick2phyloxml --save

Usage

  var options = {
    leaf : {
      delimiters : [{
        attribute : "name",
        delimiter : '|'
      }]
    }
  }
 
  var newickStr = "(((PSYCK_2_PE1609|PSYCK_2_PE1609:0.635238,MARMS_1_PE3808|MARMS_1_PE3808:0.709109)0.868000:0.171902,((THIS3_1_PE3522|THIS3_1_PE3522:0.023247,THIK1_1_PE1498|THIK1_1_PE1498:0.007217)1.000000:0.570654,PELLD_1_PE1853|PELLD_1_PE1853:0.564767)0.975000:0.279237)1.000000:0.873015,PECCP_1_PE485|PECCP_1_PE485:0.144019,DICDC_1_PE54|DICDC_1_PE54:0.041863);"
 
 
  newickToPhyloXML.newickToPhyloXML(newickStr,function (data) {
    console.log(data);
  },options);