clustergrammer

1.19.5 • Public • Published
Clustergramer

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Clustergrammer is a web-based tool for visualizing high-dimensional data (e.g. a matrix) as an interactive and shareable hierarchically clustered heatmap. Clustergrammer's front end (Clustergrammer-JS) is built using D3.js and its back-end (Clustergrammer-PY) is built using Python. Clustergrammer produces highly interactive visualizations that enable intuitive exploration of high-dimensional data and has several biology-specific features (e.g. enrichment analysis, see Biology-Specific Features) to facilitate the exploration of gene-level biological data. Click the screenshot below to view an interactive tutorial:

demo_screenshot

Clustergrammer's interacive features include:

Clustergrammer can be used in three main ways (this repo contains the source code for Clustergrammer-JS):

For information about building a webpage or app using Clustergrammer see: Web-Development with Clustergrammer

Using Clustergrammer

Pleae see Clustergramer's documentation for detailed information or select a specific topic below:

Citing Clustergrammer

Please consider supporting Clustergrammer by citing our publication:

Fernandez, N. F. et al. Clustergrammer, a web-based heatmap visualization and analysis tool for high-dimensional biological data. Sci. Data 4:170151 doi: 10.1038/sdata.2017.151 (2017).

Licensing

Clustergrammer was developed by the Ma'ayan lab at the Icahn School of Medicine at Mount Sinai for the BD2K-LINCS DCIC and the KMC-IDG. Clustergrammer's license and third-party licenses are in the LICENSES directory and more information can be found at Clustergrammer License.

Please contact us for support, licensing questions, comments, and suggestions.

Dependencies (11)

Dev Dependencies (12)

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Install

npm i clustergrammer

Weekly Downloads

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Version

1.19.5

License

MIT

Unpacked Size

32.2 MB

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281

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