biojs-vis-tsne

0.1.1 • Public • Published

biojs-vis-tsne

NPM version

A t-SNE web visualisation for high-dimensional data

Research Paper

The algorithm was originally described in this paper:

L.J.P. van der Maaten and G.E. Hinton.
Visualizing High-Dimensional Data Using t-SNE. Journal of Machine Learning Research
9(Nov):2579-2605, 2008.

You can find the PDF here.

Getting Started

Install the module with: npm install biojs-vis-tsne

 
var tsne = require('biojs-vis-tsne');
 
tsne.run({
path:"path/to/csv", 
width:900, //default
height:600, //default
id:"tsne" //default div id
})
 
tsne.setPerplexity(30); //Default 10

Documentation

tsne.run(opts)

The 'run' method takes the id of a div and creates a t-SNE visualisation of csv data (given its path)

tsne.setPerplexity(int)

The 'setPerplexity' method takes an integer as input parameter

Contributing

All contributions are welcome.

Support

If you have any problem or suggestion please open an issue here.

License

This software is licensed under the Apache 2 license, quoted below.

Copyright (c) 2015, David

Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at

http://www.apache.org/licenses/LICENSE-2.0

Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. See the License for the specific language governing permissions and limitations under the License.

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