bdgenomics.mango.pileup

bdgenomics.mango.pileup

An interactive genomic visualization tool for Jupyter lab and notebooks.

Usage

Prerequisites

• node > 12
• Jupyter lab Version 2.0.1 or Jupyter notebook

To use bdgenomics.mango.pileup, install it via NPM:

npm install --save bdgenomics.mango.pileup

To use bdgenomics.mango.pileup in jupyter lab, run:

jupyter labextension install bdgenomics.mango.pileup

To view the installed extension, run:

jupyter labextension list

bdgenomics.mango.pileup should be listed and enabled.

You will also need to install bdgenomics.mango.pileup from PyPI:

pip install bdgenomics.mango.pileup

Note: the npm version and frontend version in bdgenomics.mango.pileup must match.

Matching versions:

npm	pypi
0.0.5-beta.0	0.0.6a1

Development

• git clone https://github.com/bigdatagenomics/mango.git
• cd mango-pileup/bdgenomics/mango/js
• make develop